J4_5ME1_002

3D structure

PDB id

5ME1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5ME1|1|A|C|183, 5ME1|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ME1_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0741

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5ME1|1|A|G|142
5ME1|1|A|A|143
5ME1|1|A|G|144
*
5ME1|1|A|C|178
5ME1|1|A|A|179
5ME1|1|A|U|180
5ME1|1|A|A|181
5ME1|1|A|A|182
5ME1|1|A|C|183
5ME1|1|A|G|184
*
5ME1|1|A|C|193
5ME1|1|A|C|194
5ME1|1|A|A|195
5ME1|1|A|A|196
5ME1|1|A|A|197
5ME1|1|A|G|198
*
5ME1|1|A|U|219
5ME1|1|A|G|220
5ME1|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20