3D structure

PDB id
5MEI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Agelastatin A bound to the 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
AAG*CGAAAG*CCAUAAACUAUG*UU
Length
23 nucleotides
Bulged bases
5MEI|1|A|A|623, 5MEI|1|A|A|1026, 5MEI|1|A|U|1029, 5MEI|1|A|U|1031
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5MEI_013 not in the Motif Atlas
Homologous match to J4_8P9A_022
Geometric discrepancy: 0.0628
The information below is about J4_8P9A_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_14595.1
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
5

Unit IDs

5MEI|1|A|A|622
5MEI|1|A|A|623
5MEI|1|A|G|624
*
5MEI|1|A|C|975
5MEI|1|A|G|976
5MEI|1|A|A|977
5MEI|1|A|A|978
5MEI|1|A|A|979
5MEI|1|A|G|980
*
5MEI|1|A|C|1021
5MEI|1|A|C|1022
5MEI|1|A|A|1023
5MEI|1|A|U|1024
5MEI|1|A|A|1025
5MEI|1|A|A|1026
5MEI|1|A|A|1027
5MEI|1|A|C|1028
5MEI|1|A|U|1029
5MEI|1|A|A|1030
5MEI|1|A|U|1031
5MEI|1|A|G|1032
*
5MEI|1|A|U|1103
5MEI|1|A|U|1104

Current chains

Chain A
18S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain AO
60S ribosomal protein L41-B
Chain M
40S ribosomal protein S11-A
Chain O
40S ribosomal protein S13
Chain P
40S ribosomal protein S14-B
Chain X
40S ribosomal protein S22-A
Chain Y
40S ribosomal protein S23-A
Chain b
40S ribosomal protein S26-B

Coloring options:


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