J4_5MEI_016

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

5MEI|1|AR|A|1452, 5MEI|1|AR|U|1455, 5MEI|1|AR|A|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MEI_016 not in the Motif Atlas

Homologous match to J4_8P9A_014

Geometric discrepancy: 0.0653

The information below is about J4_8P9A_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_34212.1

Basepair signature

cWW-F-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5MEI|1|AR|C|1451
5MEI|1|AR|A|1452
5MEI|1|AR|A|1453
5MEI|1|AR|A|1454
5MEI|1|AR|U|1455
5MEI|1|AR|A|1456
5MEI|1|AR|U|1457
*
5MEI|1|AR|A|1475
5MEI|1|AR|G|1476
*
5MEI|1|AR|U|1877
5MEI|1|AR|G|1878
5MEI|1|AR|A|1879
5MEI|1|AR|U|1880
*
5MEI|1|AR|A|2352
5MEI|1|AR|G|2353

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CR

60S ribosomal protein L17-A

Chain CT

60S ribosomal protein L19-A

Chain DF

60S ribosomal protein L31-A