J4_5MEI_020

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MEI_020 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.0838

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5MEI|1|AR|C|2192
5MEI|1|AR|U|2193
5MEI|1|AR|G|2194
*
5MEI|1|AR|C|2248
5MEI|1|AR|G|2249
*
5MEI|1|AR|C|2267
5MEI|1|AR|U|2268
5MEI|1|AR|U|2269
5MEI|1|AR|A|2270
5MEI|1|AR|A|2271
5MEI|1|AR|G|2272
5MEI|1|AR|G|2273
5MEI|1|AR|U|2274
5MEI|1|AR|A|2275
5MEI|1|AR|G|2276
*
5MEI|1|AR|U|2310
5MEI|1|AR|G|2311
5MEI|1|AR|A|2312
5MEI|1|AR|A|2313
5MEI|1|AR|U|2314
5MEI|1|AR|G|2315

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain 6

Small subunit ribosomal RNA; SSU rRNA

Chain CD

60S ribosomal protein L2-A

Chain DP

60S ribosomal protein L41-B