J4_5MGP_007

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MGP_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0638

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5MGP|1|A|A|1772
5MGP|1|A|A|1773
5MGP|1|A|C|1774
5MGP|1|A|U|1775
5MGP|1|A|G|1776
*
5MGP|1|A|C|1788
5MGP|1|A|A|1789
5MGP|1|A|C|1790
5MGP|1|A|A|1791
5MGP|1|A|G|1792
*
5MGP|1|A|U|1827
5MGP|1|A|G|1828
5MGP|1|A|A|1829
5MGP|1|A|C|1830
*
5MGP|1|A|G|1975
5MGP|1|A|U|1976
5MGP|1|A|A|1977
5MGP|1|A|A|1978
5MGP|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA