J4_5MLC_004

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*ACCUGUAC

Length

21 nucleotides

Bulged bases

5MLC|1|A|G|1362

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MLC_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1252

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5MLC|1|A|G|1331
5MLC|1|A|G|1332
5MLC|1|A|U|1333
5MLC|1|A|U|1334
5MLC|1|A|C|1335
*
5MLC|1|A|G|1359
5MLC|1|A|G|1360
5MLC|1|A|U|1361
5MLC|1|A|G|1362
5MLC|1|A|A|1363
5MLC|1|A|G|1364
*
5MLC|1|A|C|1425
5MLC|1|A|U|1426
*
5MLC|1|A|A|1633
5MLC|1|A|C|1634
5MLC|1|A|C|1635
5MLC|1|A|U|1636
5MLC|1|A|G|1637
5MLC|1|A|U|1638
5MLC|1|A|A|1639
5MLC|1|A|C|1640

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 4

50S ribosomal protein L34, chloroplastic

Chain 7

PSRP5alpha, chloroplastic

Chain V

50S ribosomal protein L23, chloroplastic