J4_5MLC_007

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MLC_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0681

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5MLC|1|A|G|1782
5MLC|1|A|A|1783
5MLC|1|A|C|1784
5MLC|1|A|U|1785
5MLC|1|A|G|1786
*
5MLC|1|A|C|1798
5MLC|1|A|A|1799
5MLC|1|A|C|1800
5MLC|1|A|A|1801
5MLC|1|A|G|1802
*
5MLC|1|A|U|1837
5MLC|1|A|G|1838
5MLC|1|A|A|1839
5MLC|1|A|C|1840
*
5MLC|1|A|G|1989
5MLC|1|A|U|1990
5MLC|1|A|A|1991
5MLC|1|A|A|1992
5MLC|1|A|C|1993

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain D

50S ribosomal protein L2, chloroplastic