J4_5MMI_001

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CU*GAGUAG*UGAAUCAG*CAAG

Length

20 nucleotides

Bulged bases

5MMI|1|A|A|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MMI_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.164

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

5MMI|1|A|C|253
5MMI|1|A|U|254
*
5MMI|1|A|G|382
5MMI|1|A|A|383
5MMI|1|A|G|384
5MMI|1|A|U|385
5MMI|1|A|A|386
5MMI|1|A|G|387
*
5MMI|1|A|U|411
5MMI|1|A|G|412
5MMI|1|A|A|413
5MMI|1|A|A|414
5MMI|1|A|U|415
5MMI|1|A|C|416
5MMI|1|A|A|417
5MMI|1|A|G|418
*
5MMI|1|A|C|433
5MMI|1|A|A|434
5MMI|1|A|A|435
5MMI|1|A|G|436

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

plastid ribosomal protein bL9c

Chain Y

plastid ribosomal protein bL28c