J4_5MMI_004
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGCAAAC*GC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 5MMI|1|A|G|1292, 5MMI|1|A|C|1293, 5MMI|1|A|A|1294, 5MMI|1|A|A|1296, 5MMI|1|A|G|1683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5MMI_004 not in the Motif Atlas
- Homologous match to J4_7A0S_004
- Geometric discrepancy: 0.1884
- The information below is about J4_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5MMI|1|A|C|1291
5MMI|1|A|G|1292
5MMI|1|A|C|1293
5MMI|1|A|A|1294
5MMI|1|A|A|1295
5MMI|1|A|A|1296
5MMI|1|A|C|1297
*
5MMI|1|A|G|1315
5MMI|1|A|C|1316
*
5MMI|1|A|G|1681
5MMI|1|A|C|1682
5MMI|1|A|G|1683
5MMI|1|A|C|1684
*
5MMI|1|A|G|2023
5MMI|1|A|G|2024
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L32, chloroplastic
- Chain O
- plastid ribosomal protein bL17c
- Chain T
- 50S ribosomal protein L22, chloroplastic
Coloring options: