J4_5MMI_008

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MMI_008 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.0792

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5MMI|1|A|G|1782
5MMI|1|A|A|1783
5MMI|1|A|C|1784
5MMI|1|A|U|1785
5MMI|1|A|G|1786
*
5MMI|1|A|C|1798
5MMI|1|A|A|1799
5MMI|1|A|C|1800
5MMI|1|A|A|1801
5MMI|1|A|G|1802
*
5MMI|1|A|U|1837
5MMI|1|A|G|1838
5MMI|1|A|A|1839
5MMI|1|A|C|1840
*
5MMI|1|A|G|1989
5MMI|1|A|U|1990
5MMI|1|A|A|1991
5MMI|1|A|A|1992
5MMI|1|A|C|1993

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2, chloroplastic