J4_5MY1_001

3D structure

PDB id

5MY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli expressome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5MY1|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MY1_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.2645

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5MY1|1|A|G|115
5MY1|1|A|A|116
5MY1|1|A|G|117
5MY1|1|A|U|118
5MY1|1|A|A|119
5MY1|1|A|A|120
5MY1|1|A|U|121
5MY1|1|A|G|122
*
5MY1|1|A|U|239
5MY1|1|A|G|240
*
5MY1|1|A|C|286
5MY1|1|A|U|287
5MY1|1|A|A|288
5MY1|1|A|G|289
*
5MY1|1|A|C|311
5MY1|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17