J4_5NCO_008

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NCO_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0639

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5NCO|1|A|A|1772
5NCO|1|A|A|1773
5NCO|1|A|C|1774
5NCO|1|A|U|1775
5NCO|1|A|G|1776
*
5NCO|1|A|C|1788
5NCO|1|A|A|1789
5NCO|1|A|C|1790
5NCO|1|A|A|1791
5NCO|1|A|G|1792
*
5NCO|1|A|U|1827
5NCO|1|A|G|1828
5NCO|1|A|A|1829
5NCO|1|A|C|1830
*
5NCO|1|A|G|1975
5NCO|1|A|U|1976
5NCO|1|A|A|1977
5NCO|1|A|A|1978
5NCO|1|A|U|1979

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2