J4_5NCO_010
3D structure
- PDB id
- 5NCO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 5NCO|1|A|A|2288, 5NCO|1|A|G|2382
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NCO_010 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.0775
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5NCO|1|A|C|2285
5NCO|1|A|G|2286
5NCO|1|A|A|2287
5NCO|1|A|A|2288
5NCO|1|A|G|2289
*
5NCO|1|A|U|2343
5NCO|1|A|U|2344
5NCO|1|A|G|2345
5NCO|1|A|A|2346
5NCO|1|A|C|2347
*
5NCO|1|A|G|2370
5NCO|1|A|G|2371
5NCO|1|A|U|2372
*
5NCO|1|A|A|2381
5NCO|1|A|G|2382
5NCO|1|A|G|2383
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain P
- 50S ribosomal protein L18
- Chain X
- 50S ribosomal protein L27
- Chain c
- 50S ribosomal protein L33
- Chain e
- 50S ribosomal protein L35
Coloring options: