J4_5ND9_013
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 5ND9|1|a|C|584, 5ND9|1|a|A|823, 5ND9|1|a|C|825, 5ND9|1|a|G|826, 5ND9|1|a|A|827, 5ND9|1|a|U|828
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5ND9_013 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.1522
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5ND9|1|a|G|583
5ND9|1|a|C|584
5ND9|1|a|G|585
*
5ND9|1|a|C|772
5ND9|1|a|G|773
5ND9|1|a|A|774
5ND9|1|a|A|775
5ND9|1|a|A|776
5ND9|1|a|G|777
*
5ND9|1|a|C|818
5ND9|1|a|C|819
5ND9|1|a|G|820
5ND9|1|a|U|821
5ND9|1|a|A|822
5ND9|1|a|A|823
5ND9|1|a|A|824
5ND9|1|a|C|825
5ND9|1|a|G|826
5ND9|1|a|A|827
5ND9|1|a|U|828
5ND9|1|a|G|829
*
5ND9|1|a|C|889
5ND9|1|a|C|890
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
- Chain u
- 30S ribosomal protein S21
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