J4_5NDV_022
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 5NDV|1|6|A|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NDV_022 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.0798
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5NDV|1|6|C|99
5NDV|1|6|A|100
5NDV|1|6|U|101
5NDV|1|6|U|102
5NDV|1|6|A|103
5NDV|1|6|A|104
5NDV|1|6|A|105
5NDV|1|6|U|106
5NDV|1|6|C|107
*
5NDV|1|6|G|307
5NDV|1|6|C|308
5NDV|1|6|C|309
*
5NDV|1|6|G|357
5NDV|1|6|U|358
5NDV|1|6|A|359
5NDV|1|6|A|360
5NDV|1|6|C|361
*
5NDV|1|6|G|383
5NDV|1|6|G|384
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
- Chain d3
- 40S ribosomal protein S23-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s8
- 40S ribosomal protein S8-A
Coloring options: