J4_5NDW_010
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 5NDW|1|2|A|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NDW_010 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.0679
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5NDW|1|2|C|99
5NDW|1|2|A|100
5NDW|1|2|U|101
5NDW|1|2|U|102
5NDW|1|2|A|103
5NDW|1|2|A|104
5NDW|1|2|A|105
5NDW|1|2|U|106
5NDW|1|2|C|107
*
5NDW|1|2|G|307
5NDW|1|2|C|308
5NDW|1|2|C|309
*
5NDW|1|2|G|357
5NDW|1|2|U|358
5NDW|1|2|A|359
5NDW|1|2|A|360
5NDW|1|2|C|361
*
5NDW|1|2|G|383
5NDW|1|2|G|384
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C1
- 40S ribosomal protein S11-A
- Chain D3
- 40S ribosomal protein S23-A
- Chain S4
- 40S ribosomal protein S4-A
- Chain S8
- 40S ribosomal protein S8-A
Coloring options: