J4_5NG8_011
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 5NG8|1|Aa|C|584, 5NG8|1|Aa|A|823, 5NG8|1|Aa|C|825, 5NG8|1|Aa|A|827
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NG8_011 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.1093
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5NG8|1|Aa|G|583
5NG8|1|Aa|C|584
5NG8|1|Aa|G|585
*
5NG8|1|Aa|C|772
5NG8|1|Aa|G|773
5NG8|1|Aa|A|774
5NG8|1|Aa|A|775
5NG8|1|Aa|A|776
5NG8|1|Aa|G|777
*
5NG8|1|Aa|C|818
5NG8|1|Aa|C|819
5NG8|1|Aa|G|820
5NG8|1|Aa|U|821
5NG8|1|Aa|A|822
5NG8|1|Aa|A|823
5NG8|1|Aa|A|824
5NG8|1|Aa|C|825
5NG8|1|Aa|G|826
5NG8|1|Aa|A|827
5NG8|1|Aa|U|828
5NG8|1|Aa|G|829
*
5NG8|1|Aa|C|888
5NG8|1|Aa|C|889
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ah
- 30S ribosomal protein S8
- Chain Al
- 30S ribosomal protein S12
- Chain Ao
- 30S ribosomal protein S15
- Chain Aq
- 30S ribosomal protein S17
- Chain Au
- 30S ribosomal protein S21
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