J4_5NGM_009

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NGM_009 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1322

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5NGM|1|AA|G|2670
5NGM|1|AA|A|2671
5NGM|1|AA|G|2672
5NGM|1|AA|C|2673
*
5NGM|1|AA|G|2701
5NGM|1|AA|A|2702
5NGM|1|AA|C|2703
*
5NGM|1|AA|G|2758
5NGM|1|AA|G|2759
5NGM|1|AA|A|2760
5NGM|1|AA|C|2761
5NGM|1|AA|G|2762
*
5NGM|1|AA|C|2796
5NGM|1|AA|C|2797
5NGM|1|AA|C|2798

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AH

50S ribosomal protein L13

Chain AI

50S ribosomal protein L14