J4_5NJT_009

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

5NJT|1|U|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NJT_009 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.1283

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5NJT|1|U|U|1352
5NJT|1|U|C|1353
*
5NJT|1|U|G|1377
5NJT|1|U|G|1378
5NJT|1|U|U|1379
5NJT|1|U|U|1380
5NJT|1|U|A|1381
5NJT|1|U|G|1382
*
5NJT|1|U|C|1443
5NJT|1|U|C|1444
*
5NJT|1|U|G|1642
5NJT|1|U|C|1643
5NJT|1|U|C|1644
5NJT|1|U|C|1645
5NJT|1|U|G|1646
5NJT|1|U|U|1647
5NJT|1|U|A|1648

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L23