J4_5NJT_014

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NJT_014 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1956

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5NJT|1|U|G|2672
5NJT|1|U|A|2673
5NJT|1|U|G|2674
5NJT|1|U|C|2675
*
5NJT|1|U|G|2703
5NJT|1|U|A|2704
5NJT|1|U|C|2705
*
5NJT|1|U|G|2760
5NJT|1|U|G|2761
5NJT|1|U|A|2762
5NJT|1|U|C|2763
5NJT|1|U|G|2764
*
5NJT|1|U|C|2798
5NJT|1|U|C|2799
5NJT|1|U|C|2800

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L3

Chain c

50S ribosomal protein L13

Chain d

50S ribosomal protein L14