J4_5NJT_015

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC*GAUGGUU*AUAAAAG*CAC

Length

20 nucleotides

Bulged bases

5NJT|1|A|A|210, 5NJT|1|A|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NJT_015 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.3078

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5NJT|1|A|G|141
5NJT|1|A|A|142
5NJT|1|A|C|143
*
5NJT|1|A|G|177
5NJT|1|A|A|178
5NJT|1|A|U|179
5NJT|1|A|G|180
5NJT|1|A|G|181
5NJT|1|A|U|182
5NJT|1|A|U|183
*
5NJT|1|A|A|206
5NJT|1|A|U|207
5NJT|1|A|A|208
5NJT|1|A|A|209
5NJT|1|A|A|210
5NJT|1|A|A|211
5NJT|1|A|G|212
*
5NJT|1|A|C|227
5NJT|1|A|A|228
5NJT|1|A|C|229

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20