J4_5NO4_001

3D structure

PDB id

5NO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5NO4|1|A|U|121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NO4_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1804

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5NO4|1|A|G|115
5NO4|1|A|A|116
5NO4|1|A|G|117
5NO4|1|A|U|118
5NO4|1|A|A|119
5NO4|1|A|A|120
5NO4|1|A|U|121
5NO4|1|A|G|122
*
5NO4|1|A|U|239
5NO4|1|A|G|240
*
5NO4|1|A|C|286
5NO4|1|A|U|287
5NO4|1|A|A|288
5NO4|1|A|G|289
*
5NO4|1|A|C|311
5NO4|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17