J4_5NRG_007

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NRG_007 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.0652

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5NRG|1|X|G|1799
5NRG|1|X|A|1800
5NRG|1|X|C|1801
5NRG|1|X|U|1802
5NRG|1|X|G|1803
*
5NRG|1|X|C|1815
5NRG|1|X|A|1816
5NRG|1|X|C|1817
5NRG|1|X|A|1818
5NRG|1|X|G|1819
*
5NRG|1|X|U|1854
5NRG|1|X|G|1855
5NRG|1|X|A|1856
5NRG|1|X|C|1857
*
5NRG|1|X|G|2002
5NRG|1|X|U|2003
5NRG|1|X|A|2004
5NRG|1|X|A|2005
5NRG|1|X|C|2006

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2