3D structure

PDB id
5O61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The complete structure of the Mycobacterium smegmatis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.31 Å

Loop

Sequence
UC*GGUGAG*CC*GCCCGUA
Length
17 nucleotides
Bulged bases
5O61|1|A|G|1456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5O61_005 not in the Motif Atlas
Homologous match to J4_4WF9_006
Geometric discrepancy: 0.0945
The information below is about J4_4WF9_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_10313.5
Basepair signature
cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

5O61|1|A|U|1428
5O61|1|A|C|1429
*
5O61|1|A|G|1453
5O61|1|A|G|1454
5O61|1|A|U|1455
5O61|1|A|G|1456
5O61|1|A|A|1457
5O61|1|A|G|1458
*
5O61|1|A|C|1519
5O61|1|A|C|1520
*
5O61|1|A|G|1815
5O61|1|A|C|1816
5O61|1|A|C|1817
5O61|1|A|C|1818
5O61|1|A|G|1819
5O61|1|A|U|1820
5O61|1|A|A|1821

Current chains

Chain A
23S rRNA

Nearby chains

Chain U
50S ribosomal protein L23

Coloring options:


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