J4_5O61_014
3D structure
- PDB id
- 5O61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The complete structure of the Mycobacterium smegmatis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 5O61|1|BW|U|8, 5O61|1|BW|U|47, 5O61|1|BW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5O61_014 not in the Motif Atlas
- Homologous match to J4_3WQY_001
- Geometric discrepancy: 0.2312
- The information below is about J4_3WQY_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
5O61|1|BW|A|7
5O61|1|BW|U|8
5O61|1|BW|A|9
5O61|1|BW|G|10
*
5O61|1|BW|C|25
5O61|1|BW|A|26
5O61|1|BW|G|27
*
5O61|1|BW|C|43
5O61|1|BW|G|44
5O61|1|BW|U|45
5O61|1|BW|G|46
5O61|1|BW|U|47
5O61|1|BW|C|48
5O61|1|BW|C|49
*
5O61|1|BW|G|65
5O61|1|BW|U|66
Current chains
- Chain BW
- P/P-site Phe-tRNA(Phe)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain BM
- 30S ribosomal protein S13
- Chain N
- 50S ribosomal protein L16
- Chain X
- 50S ribosomal protein L27
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