J4_5ON6_013

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACUAUG*UU

Length

23 nucleotides

Bulged bases

5ON6|1|A|A|623, 5ON6|1|A|A|1026, 5ON6|1|A|C|1028, 5ON6|1|A|U|1029, 5ON6|1|A|A|1030, 5ON6|1|A|U|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ON6_013 not in the Motif Atlas

Homologous match to J4_8P9A_022

Geometric discrepancy: 0.053

The information below is about J4_8P9A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5ON6|1|A|A|622
5ON6|1|A|A|623
5ON6|1|A|G|624
*
5ON6|1|A|C|975
5ON6|1|A|G|976
5ON6|1|A|A|977
5ON6|1|A|A|978
5ON6|1|A|A|979
5ON6|1|A|G|980
*
5ON6|1|A|C|1021
5ON6|1|A|C|1022
5ON6|1|A|A|1023
5ON6|1|A|U|1024
5ON6|1|A|A|1025
5ON6|1|A|A|1026
5ON6|1|A|A|1027
5ON6|1|A|C|1028
5ON6|1|A|U|1029
5ON6|1|A|A|1030
5ON6|1|A|U|1031
5ON6|1|A|G|1032
*
5ON6|1|A|U|1103
5ON6|1|A|U|1104

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AO

60S ribosomal protein L41-B

Chain M

40S ribosomal protein S11-A

Chain O

40S ribosomal protein S13

Chain P

40S ribosomal protein S14-B

Chain X

40S ribosomal protein S22-A

Chain Y

40S ribosomal protein S23-A

Chain b

40S ribosomal protein S26-B