J4_5OPT_001
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAUUACAUC*GCC*GAGC*GG
- Length
- 18 nucleotides
- Bulged bases
- 5OPT|1|E|C|101
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5OPT_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.3149
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5OPT|1|E|C|96
5OPT|1|E|A|97
5OPT|1|E|U|98
5OPT|1|E|U|99
5OPT|1|E|A|100
5OPT|1|E|C|101
5OPT|1|E|A|102
5OPT|1|E|U|103
5OPT|1|E|C|104
*
5OPT|1|E|G|355
5OPT|1|E|C|356
5OPT|1|E|C|357
*
5OPT|1|E|G|405
5OPT|1|E|A|406
5OPT|1|E|G|407
5OPT|1|E|C|408
*
5OPT|1|E|G|430
5OPT|1|E|G|431
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain L
- 40S ribosomal protein S4
- Chain M
- 40S ribosomal protein S23, putative
- Chain X
- 40S ribosomal protein S11, putative
- Chain Z
- 40S ribosomal protein S8
Coloring options: