J4_5OT7_002
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAG*CAUGUG*CAAAG*CGC
- Length
- 17 nucleotides
- Bulged bases
- 5OT7|1|1|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5OT7_002 not in the Motif Atlas
- Homologous match to J4_6CZR_012
- Geometric discrepancy: 0.2559
- The information below is about J4_6CZR_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_36568.1
- Basepair signature
- cWW-tSS-cWW-cWW-cWW-tWH-tWH-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5OT7|1|1|G|142
5OT7|1|1|A|143
5OT7|1|1|G|144
*
5OT7|1|1|C|178
5OT7|1|1|A|179
5OT7|1|1|U|180
5OT7|1|1|G|181
5OT7|1|1|U|182
5OT7|1|1|G|183
*
5OT7|1|1|C|194
5OT7|1|1|A|195
5OT7|1|1|A|196
5OT7|1|1|A|197
5OT7|1|1|G|198
*
5OT7|1|1|C|219
5OT7|1|1|G|220
5OT7|1|1|C|221
Current chains
- Chain 1
- 16S Ribosomal RNA
Nearby chains
- Chain O
- 30S ribosomal protein S16
- Chain S
- 30S ribosomal protein S20
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