J4_5OT7_008

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5OT7|1|4|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5OT7_008 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1627

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

5OT7|1|4|C|268
5OT7|1|4|U|269
*
5OT7|1|4|G|370
5OT7|1|4|A|371
5OT7|1|4|G|372
5OT7|1|4|U|373
5OT7|1|4|A|374
5OT7|1|4|C|375
*
5OT7|1|4|G|399
5OT7|1|4|G|400
5OT7|1|4|A|401
5OT7|1|4|A|402
5OT7|1|4|U|403
5OT7|1|4|C|404
5OT7|1|4|U|405
5OT7|1|4|G|406
*
5OT7|1|4|U|421
5OT7|1|4|A|422
5OT7|1|4|A|423
5OT7|1|4|G|424

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L9

Chain W

50S ribosomal protein L28