J4_5OT7_009

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5OT7_009 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1604

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

5OT7|1|4|C|297
5OT7|1|4|G|298
5OT7|1|4|A|299
5OT7|1|4|A|300
5OT7|1|4|G|301
*
5OT7|1|4|C|316
5OT7|1|4|G|317
5OT7|1|4|C|318
5OT7|1|4|C|319
*
5OT7|1|4|G|323
5OT7|1|4|A|324
5OT7|1|4|G|325
*
5OT7|1|4|C|337
5OT7|1|4|G|338
5OT7|1|4|U|339
5OT7|1|4|A|340
5OT7|1|4|G|341

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain i

50S ribosomal protein L4

Chain z

50S ribosomal protein L24