J4_5OT7_020
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGUUC*GGUUAG*CU*ACCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 5OT7|1|4|U|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5OT7_020 not in the Motif Atlas
- Homologous match to J4_9DFE_004
- Geometric discrepancy: 0.1088
- The information below is about J4_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77353.1
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
5OT7|1|4|G|1310
5OT7|1|4|G|1311
5OT7|1|4|U|1312
5OT7|1|4|U|1313
5OT7|1|4|C|1314
*
5OT7|1|4|G|1338
5OT7|1|4|G|1339
5OT7|1|4|U|1340
5OT7|1|4|U|1341
5OT7|1|4|A|1342
5OT7|1|4|G|1343
*
5OT7|1|4|C|1404
5OT7|1|4|U|1405
*
5OT7|1|4|A|1597
5OT7|1|4|C|1598
5OT7|1|4|C|1599
5OT7|1|4|C|1600
5OT7|1|4|G|1601
5OT7|1|4|U|1602
5OT7|1|4|A|1603
5OT7|1|4|C|1604
Current chains
- Chain 4
- 23S Ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L34
- Chain y
- 50S ribosomal protein L23
Coloring options: