J4_5T2A_002
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAAGAU*AU*ACAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 5T2A|1|A|A|1544, 5T2A|1|A|G|1547
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5T2A_002 not in the Motif Atlas
- Homologous match to J4_8C3A_003
- Geometric discrepancy: 0.238
- The information below is about J4_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2A|1|A|C|1543
5T2A|1|A|A|1544
5T2A|1|A|A|1545
5T2A|1|A|A|1546
5T2A|1|A|G|1547
5T2A|1|A|A|1548
5T2A|1|A|U|1549
*
5T2A|1|A|A|1582
5T2A|1|A|U|1583
*
5T2A|1|B|A|59
5T2A|1|B|C|60
5T2A|1|B|A|61
5T2A|1|B|U|62
*
5T2A|1|B|A|535
5T2A|1|B|G|536
Current chains
- Chain A
- LSU-alpha
- Chain B
- LSU-beta
Nearby chains
- Chain G
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- uL22
- Chain R
- eL19
- Chain f
- eL31
Coloring options: