J4_5T2A_005
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AACUG*CAUAG*UGAUU*AUUAAU
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5T2A_005 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0866
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
5T2A|1|B|A|313
5T2A|1|B|A|314
5T2A|1|B|C|315
5T2A|1|B|U|316
5T2A|1|B|G|317
*
5T2A|1|B|C|329
5T2A|1|B|A|330
5T2A|1|B|U|331
5T2A|1|B|A|332
5T2A|1|B|G|333
*
5T2A|1|B|U|369
5T2A|1|B|G|370
5T2A|1|B|A|371
5T2A|1|B|U|372
5T2A|1|B|U|373
*
5T2A|1|B|A|500
5T2A|1|B|U|501
5T2A|1|B|U|502
5T2A|1|B|A|503
5T2A|1|B|A|504
5T2A|1|B|U|505
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- srRNA1
- Chain c
- uL2
- Chain m
- eL43
Coloring options: