J4_5T2A_010
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUUU*AGUUGU*AU*GACCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 5T2A|1|A|U|1630
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5T2A_010 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.147
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47264.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T2A|1|A|G|1599
5T2A|1|A|A|1600
5T2A|1|A|U|1601
5T2A|1|A|U|1602
5T2A|1|A|U|1603
*
5T2A|1|A|A|1627
5T2A|1|A|G|1628
5T2A|1|A|U|1629
5T2A|1|A|U|1630
5T2A|1|A|G|1631
5T2A|1|A|U|1632
*
5T2A|1|A|A|1771
5T2A|1|A|U|1772
*
5T2A|1|B|G|11
5T2A|1|B|A|12
5T2A|1|B|C|13
5T2A|1|B|C|14
5T2A|1|B|G|15
5T2A|1|B|U|16
5T2A|1|B|A|17
5T2A|1|B|C|18
Current chains
- Chain A
- LSU-alpha
- Chain B
- LSU-beta
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain E
- srRNA1
- Chain R
- eL19
- Chain V
- uL23
- Chain h
- eL34
- Chain i
- uL29
- Chain l
- eL37
- Chain n
- eL38
- Chain o
- eL39
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