J4_5T2C_002

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

5T2C|1|A|A|2366, 5T2C|1|A|U|2369, 5T2C|1|A|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|A|C|2365
5T2C|1|A|A|2366
5T2C|1|A|A|2367
5T2C|1|A|A|2368
5T2C|1|A|U|2369
5T2C|1|A|A|2370
5T2C|1|A|U|2371
*
5T2C|1|A|A|2389
5T2C|1|A|G|2390
5T2C|1|A|G|2391
*
5T2C|1|A|C|2824
5T2C|1|A|A|2825
5T2C|1|A|U|2826
5T2C|1|A|G|2827
5T2C|1|A|U|2828
5T2C|1|A|U|2829
*
5T2C|1|A|A|3856
5T2C|1|A|G|3857

Current chains

Chain A

28S rRNA

Nearby chains

Chain J

60S ribosomal protein L17

Chain L

60S ribosomal protein L19

Chain X

60S ribosomal protein L31