J4_5T2C_003
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 5T2C|1|A|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5T2C_003 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.131
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47264.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T2C|1|A|G|2406
5T2C|1|A|G|2407
5T2C|1|A|U|2408
5T2C|1|A|U|2409
5T2C|1|A|C|2410
*
5T2C|1|A|G|2434
5T2C|1|A|G|2435
5T2C|1|A|U|2436
5T2C|1|A|C|2437
5T2C|1|A|A|2438
5T2C|1|A|G|2439
*
5T2C|1|A|U|2538
5T2C|1|A|C|2539
*
5T2C|1|A|G|2777
5T2C|1|A|G|2778
5T2C|1|A|C|2779
5T2C|1|A|C|2780
5T2C|1|A|G|2781
5T2C|1|A|U|2782
5T2C|1|A|A|2783
5T2C|1|A|C|2784
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L
- 60S ribosomal protein L19
- Chain R
- 60S ribosomal protein L23a
- Chain a
- 60S ribosomal protein L34
- Chain b
- 60S ribosomal protein L35
- Chain d
- 60S ribosomal protein L37
- Chain e
- 60S ribosomal protein L38
- Chain f
- 60S ribosomal protein L39
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