J4_5T2C_006
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5T2C_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1323
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
5T2C|1|A|G|3634
5T2C|1|A|A|3635
5T2C|1|A|C|3636
5T2C|1|A|U|3637
5T2C|1|A|G|3638
*
5T2C|1|A|C|3650
5T2C|1|A|A|3651
5T2C|1|A|A|3652
5T2C|1|A|A|3653
5T2C|1|A|G|3654
*
5T2C|1|A|U|3690
5T2C|1|A|G|3691
5T2C|1|A|A|3692
5T2C|1|A|U|3693
5T2C|1|A|U|3694
*
5T2C|1|A|A|3821
5T2C|1|A|U|3822
5T2C|1|A|G|3823
5T2C|1|A|A|3824
5T2C|1|A|A|3825
5T2C|1|A|C|3826
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain D
- 60S ribosomal protein L8
- Chain h
- 60S Ribosomal protein L41
- Chain j
- 60S ribosomal protein L37a
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