J4_5T2C_007

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*CGG*UCUUAAGGUAG*UGAAUG

Length

23 nucleotides

Bulged bases

5T2C|1|A|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|A|C|3696
5T2C|1|A|U|3697
5T2C|1|A|G|3698
*
5T2C|1|A|C|3752
5T2C|1|A|G|3753
5T2C|1|A|G|3754
*
5T2C|1|A|U|3770
5T2C|1|A|C|3771
5T2C|1|A|U|3772
5T2C|1|A|U|3773
5T2C|1|A|A|3774
5T2C|1|A|A|3775
5T2C|1|A|G|3776
5T2C|1|A|G|3777
5T2C|1|A|U|3778
5T2C|1|A|A|3779
5T2C|1|A|G|3780
*
5T2C|1|A|U|3814
5T2C|1|A|G|3815
5T2C|1|A|A|3816
5T2C|1|A|A|3817
5T2C|1|A|U|3818
5T2C|1|A|G|3819

Current chains

Chain A

28S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

60S ribosomal protein L8

Chain h

60S Ribosomal protein L41