J4_5T2C_014

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACGAUG*UU

Length

23 nucleotides

Bulged bases

5T2C|1|AA|A|672, 5T2C|1|AA|A|1083, 5T2C|1|AA|C|1085, 5T2C|1|AA|A|1087

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5T2C_014 not in the Motif Atlas

Homologous match to J4_8P9A_022

Geometric discrepancy: 0.1482

The information below is about J4_8P9A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5T2C|1|AA|A|671
5T2C|1|AA|A|672
5T2C|1|AA|G|673
*
5T2C|1|AA|C|1032
5T2C|1|AA|G|1033
5T2C|1|AA|A|1034
5T2C|1|AA|A|1035
5T2C|1|AA|A|1036
5T2C|1|AA|G|1037
*
5T2C|1|AA|C|1078
5T2C|1|AA|C|1079
5T2C|1|AA|A|1080
5T2C|1|AA|U|1081
5T2C|1|AA|A|1082
5T2C|1|AA|A|1083
5T2C|1|AA|A|1084
5T2C|1|AA|C|1085
5T2C|1|AA|G|1086
5T2C|1|AA|A|1087
5T2C|1|AA|U|1088
5T2C|1|AA|G|1089
*
5T2C|1|AA|U|1160
5T2C|1|AA|U|1161

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S23

Chain AE

40S ribosomal protein S26

Chain AN

40S ribosomal protein S13

Chain AO

40S ribosomal protein S14

Chain AP

40S ribosomal protein S15a

Chain Aw

40S ribosomal protein S11

Chain h

60S Ribosomal protein L41

Chain j

60S ribosomal protein L37a