J4_5T7V_007

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5T7V_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1026

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5T7V|1|B|G|1799
5T7V|1|B|A|1800
5T7V|1|B|C|1801
5T7V|1|B|U|1802
5T7V|1|B|G|1803
*
5T7V|1|B|C|1815
5T7V|1|B|A|1816
5T7V|1|B|C|1817
5T7V|1|B|A|1818
5T7V|1|B|G|1819
*
5T7V|1|B|U|1854
5T7V|1|B|G|1855
5T7V|1|B|A|1856
5T7V|1|B|C|1857
*
5T7V|1|B|G|2002
5T7V|1|B|U|2003
5T7V|1|B|A|2004
5T7V|1|B|A|2005
5T7V|1|B|C|2006

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L2

50S ribosomal protein L2