J4_5T7V_015

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

5T7V|1|B|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5T7V_015 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1341

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5T7V|1|B|G|1347
5T7V|1|B|U|1348
5T7V|1|B|U|1349
5T7V|1|B|U|1350
5T7V|1|B|C|1351
*
5T7V|1|B|G|1375
5T7V|1|B|G|1376
5T7V|1|B|U|1377
5T7V|1|B|U|1378
5T7V|1|B|A|1379
5T7V|1|B|G|1380
*
5T7V|1|B|C|1441
5T7V|1|B|C|1442
*
5T7V|1|B|G|1641
5T7V|1|B|C|1642
5T7V|1|B|C|1643
5T7V|1|B|C|1644
5T7V|1|B|G|1645
5T7V|1|B|U|1646
5T7V|1|B|A|1647
5T7V|1|B|C|1648

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L6

50S ribosomal protein L23

Chain LG

50S ribosomal protein L34