J4_5TBW_010
3D structure
- PDB id
- 5TBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 5TBW|1|A|A|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5TBW_010 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.0649
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5TBW|1|A|C|99
5TBW|1|A|A|100
5TBW|1|A|U|101
5TBW|1|A|U|102
5TBW|1|A|A|103
5TBW|1|A|A|104
5TBW|1|A|A|105
5TBW|1|A|U|106
5TBW|1|A|C|107
*
5TBW|1|A|G|307
5TBW|1|A|C|308
5TBW|1|A|C|309
*
5TBW|1|A|G|357
5TBW|1|A|U|358
5TBW|1|A|A|359
5TBW|1|A|A|360
5TBW|1|A|C|361
*
5TBW|1|A|G|383
5TBW|1|A|G|384
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S4-A
- Chain J
- 40S ribosomal protein S8-A
- Chain M
- 40S ribosomal protein S11-A
- Chain Y
- 40S ribosomal protein S23-A
Coloring options: