J4_5TCU_014

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5TCU|1|B|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5TCU_014 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1554

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

5TCU|1|B|C|271
5TCU|1|B|C|272
*
5TCU|1|B|G|416
5TCU|1|B|A|417
5TCU|1|B|G|418
5TCU|1|B|U|419
5TCU|1|B|A|420
5TCU|1|B|C|421
*
5TCU|1|B|G|445
5TCU|1|B|G|446
5TCU|1|B|A|447
5TCU|1|B|A|448
5TCU|1|B|U|449
5TCU|1|B|C|450
5TCU|1|B|U|451
5TCU|1|B|G|452
*
5TCU|1|B|U|467
5TCU|1|B|A|468
5TCU|1|B|A|469
5TCU|1|B|G|470

Current chains

Chain B

23S RRNA

Nearby chains

Chain LA

50S ribosomal protein L28