J4_5TGM_011
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 5TGM|1|2|A|623, 5TGM|1|2|A|1009, 5TGM|1|2|C|1011, 5TGM|1|2|U|1012, 5TGM|1|2|A|1013, 5TGM|1|2|U|1014
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5TGM_011 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.0742
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
5TGM|1|2|A|622
5TGM|1|2|A|623
5TGM|1|2|G|624
*
5TGM|1|2|C|958
5TGM|1|2|G|959
5TGM|1|2|A|960
5TGM|1|2|A|961
5TGM|1|2|A|962
5TGM|1|2|G|963
*
5TGM|1|2|C|1004
5TGM|1|2|C|1005
5TGM|1|2|A|1006
5TGM|1|2|U|1007
5TGM|1|2|A|1008
5TGM|1|2|A|1009
5TGM|1|2|A|1010
5TGM|1|2|C|1011
5TGM|1|2|U|1012
5TGM|1|2|A|1013
5TGM|1|2|U|1014
5TGM|1|2|G|1015
*
5TGM|1|2|U|1086
5TGM|1|2|U|1087
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C1
- 40S ribosomal protein S11-A,40S Ribosomal Protein S11
- Chain C3
- 40S ribosomal protein S13
- Chain C4
- 40S ribosomal protein S14-A
- Chain D2
- 40S ribosomal protein S22-A
- Chain D3
- 40S ribosomal protein S23-A
- Chain D6
- 40S ribosomal protein S26-B
- Chain Q1
- 60S ribosomal protein L41-A
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