3D structure

PDB id
5U4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GGGC*GAC*GGAAG*UGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5U4I_011 not in the Motif Atlas
Homologous match to J4_9DFE_010
Geometric discrepancy: 0.2308
The information below is about J4_9DFE_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_77044.4
Basepair signature
cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

5U4I|1|A|G|2643
5U4I|1|A|G|2644
5U4I|1|A|G|2645
5U4I|1|A|C|2646
*
5U4I|1|A|G|2674
5U4I|1|A|A|2675
5U4I|1|A|C|2676
*
5U4I|1|A|G|2731
5U4I|1|A|G|2732
5U4I|1|A|A|2733
5U4I|1|A|A|2734
5U4I|1|A|G|2735
*
5U4I|1|A|U|2769
5U4I|1|A|G|2770
5U4I|1|A|C|2771

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain K
50S ribosomal protein L13
Chain L
50S ribosomal protein L14

Coloring options:


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