J4_5U4I_013

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5U4I|1|a|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5U4I_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.3057

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5U4I|1|a|G|142
5U4I|1|a|A|143
5U4I|1|a|G|144
*
5U4I|1|a|C|178
5U4I|1|a|A|179
5U4I|1|a|U|180
5U4I|1|a|A|181
5U4I|1|a|A|182
5U4I|1|a|C|183
5U4I|1|a|G|184
*
5U4I|1|a|C|193
5U4I|1|a|C|194
5U4I|1|a|A|195
5U4I|1|a|A|196
5U4I|1|a|A|197
5U4I|1|a|G|198
*
5U4I|1|a|U|219
5U4I|1|a|G|220
5U4I|1|a|C|221

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20