J4_5U4I_015
3D structure
- PDB id
- 5U4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 5U4I|1|x|U|7, 5U4I|1|x|U|47, 5U4I|1|x|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5U4I_015 not in the Motif Atlas
- Homologous match to J4_4WT8_034
- Geometric discrepancy: 0.2142
- The information below is about J4_4WT8_034
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5U4I|1|x|G|6
5U4I|1|x|U|7
5U4I|1|x|G|8
5U4I|1|x|G|9
*
5U4I|1|x|C|25
5U4I|1|x|G|26
5U4I|1|x|U|27
*
5U4I|1|x|A|43
5U4I|1|x|A|44
5U4I|1|x|G|45
5U4I|1|x|G|46
5U4I|1|x|U|47
5U4I|1|x|C|48
5U4I|1|x|G|49
*
5U4I|1|x|C|65
5U4I|1|x|C|66
Current chains
- Chain x
- P-site or E-site fMet-tRNA(fMet)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- 50S ribosomal protein L16
- Chain X
- 50S ribosomal protein L27
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
- Chain v
- Peptide chain release factor 2
Coloring options: