J4_5UQ7_001

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5UQ7|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UQ7_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0973

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

5UQ7|1|A|C|268
5UQ7|1|A|U|269
*
5UQ7|1|A|G|370
5UQ7|1|A|A|371
5UQ7|1|A|G|372
5UQ7|1|A|U|373
5UQ7|1|A|A|374
5UQ7|1|A|C|375
*
5UQ7|1|A|G|399
5UQ7|1|A|G|400
5UQ7|1|A|A|401
5UQ7|1|A|A|402
5UQ7|1|A|U|403
5UQ7|1|A|C|404
5UQ7|1|A|U|405
5UQ7|1|A|G|406
*
5UQ7|1|A|U|421
5UQ7|1|A|A|422
5UQ7|1|A|A|423
5UQ7|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain I

50S ribosomal protein L9