J4_5UQ8_004

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

5UQ8|1|A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UQ8_004 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0781

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5UQ8|1|A|G|1310
5UQ8|1|A|G|1311
5UQ8|1|A|U|1312
5UQ8|1|A|U|1313
5UQ8|1|A|C|1314
*
5UQ8|1|A|G|1338
5UQ8|1|A|G|1339
5UQ8|1|A|U|1340
5UQ8|1|A|U|1341
5UQ8|1|A|A|1342
5UQ8|1|A|G|1343
*
5UQ8|1|A|C|1404
5UQ8|1|A|U|1405
*
5UQ8|1|A|A|1597
5UQ8|1|A|C|1598
5UQ8|1|A|C|1599
5UQ8|1|A|C|1600
5UQ8|1|A|G|1601
5UQ8|1|A|U|1602
5UQ8|1|A|A|1603
5UQ8|1|A|C|1604

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain X

50S ribosomal protein L23