J4_5UQ8_010

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UQ8_010 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1323

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5UQ8|1|A|G|2643
5UQ8|1|A|G|2644
5UQ8|1|A|G|2645
5UQ8|1|A|C|2646
*
5UQ8|1|A|G|2674
5UQ8|1|A|A|2675
5UQ8|1|A|C|2676
*
5UQ8|1|A|G|2731
5UQ8|1|A|G|2732
5UQ8|1|A|A|2733
5UQ8|1|A|A|2734
5UQ8|1|A|G|2735
*
5UQ8|1|A|C|2769
5UQ8|1|A|G|2770
5UQ8|1|A|C|2771

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain N

50S ribosomal protein L13

Chain O

50S ribosomal protein L14